PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 892441
Common NameARALYDRAFT_892441
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family ERF
Protein Properties Length: 346aa    MW: 38618.7 Da    PI: 4.8061
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
892441genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.81.7e-20110159255
     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
             +y+G+r+++ +g+W+AeIrdp+e    +r++lg+f taeeAa+a++aa+++++g
  892441 110 QYRGIRQRP-WGKWAAEIRDPRE---GARIWLGTFKTAEEAARAYDAAARRIRG 159
             69*******.**********965...3*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.109.5E-33110169IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-22110168IPR016177DNA-binding domain
CDDcd000186.54E-18110168No hitNo description
PROSITE profilePS5103224.395110167IPR001471AP2/ERF domain
SMARTSM003805.6E-38110173IPR001471AP2/ERF domain
PRINTSPR003671.0E-11111122IPR001471AP2/ERF domain
PfamPF008473.7E-13111159IPR001471AP2/ERF domain
PRINTSPR003671.0E-11133149IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MCGGAIISDF IPPPRSRRVT SEFIWPDLKK SSKKRSNVFD FDAEFEADFQ GFKDDSSIDC  60
DDDFDVGDVF ADVKPFVFTS TPKPAVEGSA FGKKVDGEAE RSGKRKRKNQ YRGIRQRPWG  120
KWAAEIRDPR EGARIWLGTF KTAEEAARAY DAAARRIRGS KAKVNFPEEN PKANSQKRSV  180
KANLQKPVAK PSPNPSPALV QNLNNSFDNM CFMEEEKHQQ VNNNNNQFGL TNSVDAGCNG  240
YQYFSSDQGS NSFDCSEFGW SDQAPITPDI SSALINSNNS GLFFEEANPA KKLKSMEFET  300
PYNNTEWDAS LDFLNEDAVT TQDNCVNPMD LWSIDEIHSM IGGVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-23110167260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0882040.0AY088204.1 Arabidopsis thaliana clone 42960 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002891780.10.0hypothetical protein ARALYDRAFT_892441
SwissprotQ9SSA80.0RA212_ARATH; Ethylene-responsive transcription factor RAP2-12
TrEMBLD7KLC80.0D7KLC8_ARALL; Putative uncharacterized protein
STRINGscaffold_105235.10.0(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.20.0related to AP2 12